Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli; x__Escherichia coli BIDMC 62
NCBI Strain Identifiers BIDMC 62
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_003697165.2)
Genome Characteristics
CheckM Completeness 99.97%
CheckM Contamination 0.91%
CheckM Strain Heterogeneity 16.67
5S Count 7
16S Count 8
23S Count 7
tRNA Count 20
Contig Count 21
N50 Contigs 705,442 bp
Longest Contig 1,677,831 bp
Scaffold Count 12
N50 Scaffolds 3,282,941 bp
Longest Scaffold 3,282,941 bp
Genome Size 5,392,301 bp
Protein Count 5,132
Coding Density 87.64%
GC Percentage 50.73%
Ambiguous Bases 2
GTDB representative GCA_003697165.2
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name Esch_coli_BIDMC_62_V1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN02581283
Country USA: Boston
Date 2014-05-19
Genbank Assembly Accession GCA_000692415.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source BRONCHOALVEOLAR LAVA
Latitude Longitude None
Molecule Count N/A
CDS Count 5,584
Refseq Category na
Seq Rel Date 2014/05/19
Spanned Gaps 9
Species Taxid 562
SSU Count 8
Submitter Broad Institute
Taxid 1438670
Total Gap Length 7602
Translation Table 11
tRNA Count (total) 87
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master JMUY00000000.1