Bordetella pertussis
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Burkholderiales; f__Burkholderiaceae; g__Bordetella; s__Bordetella pertussis
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Betaproteobacteria; o__Burkholderiales; f__Alcaligenaceae; g__Bordetella; s__Bordetella bronchiseptica
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Betaproteobacteria; o__Burkholderiales; f__Alcaligenaceae; g__Bordetella; s__Bordetella bronchiseptica; x__Bordetella bronchiseptica F-1
NCBI Strain Identifiers F-1
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_001525555.2)
Genome Characteristics
CheckM Completeness 100.0%
CheckM Contamination 0.23%
CheckM Strain Heterogeneity 0.0
5S Count 1
16S Count 1
23S Count 2
tRNA Count 20
Contig Count 96
N50 Contigs 127,108 bp
Longest Contig 489,364 bp
Scaffold Count 96
N50 Scaffolds 127,108 bp
Longest Scaffold 489,364 bp
Genome Size 5,377,336 bp
Protein Count 5,114
Coding Density 91.35%
GC Percentage 68.06%
Ambiguous Bases N/A
GTDB representative GCA_001525555.2
GTDB representative of species False
NCBI Metadata
Assembly Level Contig
Assembly Name gbh05v01
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN02231546
Country USA: Iowa
Date 2014-5-12
Genbank Assembly Accession GCA_000690415.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source None
Latitude Longitude None
Molecule Count N/A
CDS Count 5,134
Refseq Category na
Seq Rel Date 2014/05/12
Spanned Gaps 0
Species Taxid 518
SSU Count 1
Submitter JCVI
Taxid 1331260
Total Gap Length 0
Translation Table 11
tRNA Count (total) 48
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master JGXA00000000.1