Bordetella pertussis
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Burkholderiales; f__Burkholderiaceae; g__Bordetella; s__Bordetella pertussis
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Betaproteobacteria; o__Burkholderiales; f__Alcaligenaceae; g__Bordetella; s__Bordetella bronchiseptica
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Betaproteobacteria; o__Burkholderiales; f__Alcaligenaceae; g__Bordetella; s__Bordetella bronchiseptica; x__Bordetella bronchiseptica SO10328
NCBI Strain Identifiers SO10328
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_001525555.2)
Genome Characteristics
CheckM Completeness 100.0%
CheckM Contamination 0.0%
CheckM Strain Heterogeneity 0.0
5S Count 4
16S Count 4
23S Count 4
tRNA Count 20
Contig Count 115
N50 Contigs 100,827 bp
Longest Contig 332,897 bp
Scaffold Count 115
N50 Scaffolds 100,827 bp
Longest Scaffold 332,897 bp
Genome Size 5,116,835 bp
Protein Count 4,823
Coding Density 91.46%
GC Percentage 68.22%
Ambiguous Bases N/A
GTDB representative GCA_001525555.2
GTDB representative of species False
NCBI Metadata
Assembly Level Contig
Assembly Name gbb49v01
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN02231287
Country USA: California
Date 2014-5-12
Genbank Assembly Accession GCA_000690015.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source None
Latitude Longitude None
Molecule Count N/A
CDS Count 4,813
Refseq Category na
Seq Rel Date 2014/05/12
Spanned Gaps 0
Species Taxid 518
SSU Count 4
Submitter JCVI
Taxid 1331245
Total Gap Length 0
Translation Table 11
tRNA Count (total) 57
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master JGYB00000000.1