Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Campylobacterota; c__Campylobacteria; o__Campylobacterales; f__Helicobacteraceae; g__Helicobacter; s__Helicobacter pylori
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Epsilonproteobacteria; o__Campylobacterales; f__Helicobacteraceae; g__Helicobacter; s__Helicobacter pylori
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; x__delta/epsilon subdivisions; c__Epsilonproteobacteria; o__Campylobacterales; f__Helicobacteraceae; g__Helicobacter; s__Helicobacter pylori
NCBI Strain Identifiers J166output_6moB
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_900478295.1)
Genome Characteristics
CheckM Completeness 99.62%
CheckM Contamination 0.24%
CheckM Strain Heterogeneity 50.0
5S Count 0
16S Count 1
23S Count 1
tRNA Count 20
Contig Count 56
N50 Contigs 69,645 bp
Longest Contig 203,920 bp
Scaffold Count 56
N50 Scaffolds 69,645 bp
Longest Scaffold 203,920 bp
Genome Size 1,640,402 bp
Protein Count 1,567
Coding Density 91.16%
GC Percentage 38.96%
Ambiguous Bases N/A
GTDB representative GCA_900478295.1
GTDB representative of species False
NCBI Metadata
Assembly Level Contig
Assembly Name J166output_6moB
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN02736909
Country USA: California National Primate Research Center
Date 2014-05-12
Genbank Assembly Accession GCA_000688915.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source monkey stomach
Latitude Longitude None
Molecule Count N/A
CDS Count 1,584
Refseq Category na
Seq Rel Date 2014/05/12
Spanned Gaps 0
Species Taxid 210
SSU Count 1
Submitter Penn State University
Taxid 210
Total Gap Length 0
Translation Table 11
tRNA Count (total) 36
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master JMGL00000000.1