Escherichia coli_C
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli_C
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli; x__Escherichia coli 2-011-08_S1_C1
NCBI Strain Identifiers 2-011-08_S1_C1
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_003018335.1)
Genome Characteristics
CheckM Completeness 99.87%
CheckM Contamination 0.72%
CheckM Strain Heterogeneity 66.67
5S Count 8
16S Count 9
23S Count 8
tRNA Count 20
Contig Count 125
N50 Contigs 146,409 bp
Longest Contig 346,940 bp
Scaffold Count 125
N50 Scaffolds 146,409 bp
Longest Scaffold 346,940 bp
Genome Size 5,331,782 bp
Protein Count 5,122
Coding Density 86.74%
GC Percentage 50.21%
Ambiguous Bases N/A
GTDB representative GCA_003018335.1
GTDB representative of species False
NCBI Metadata
Assembly Level Contig
Assembly Name ASM68712v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN02680263
Country Tanzania
Date 2014-05-08
Genbank Assembly Accession GCA_000687125.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source stool
Latitude Longitude None
Molecule Count N/A
CDS Count 5,581
Refseq Category na
Seq Rel Date 2014/05/08
Spanned Gaps 0
Species Taxid 562
SSU Count 10
Submitter IGS
Taxid 1444037
Total Gap Length 0
Translation Table 11
tRNA Count (total) 103
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master JMGQ00000000.1