Streptococcus sobrinus
Isolate HQ 5S/16S/23S 17 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Streptococcaceae; g__Streptococcus; s__Streptococcus sobrinus
Filtered NCBI Taxonomy d__Bacteria; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Streptococcaceae; g__Streptococcus; s__Streptococcus sobrinus
Unfiltered NCBI Taxonomy d__Bacteria; x__Terrabacteria group; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Streptococcaceae; g__Streptococcus; s__Streptococcus sobrinus; x__Streptococcus sobrinus DSM 20742 = ATCC 33478
NCBI Strain Identifiers DSM 20742
GTDB Type Material Designation type strain of species
GTDB Representative of Species True (50 genomes in species cluster)
Genome Characteristics
CheckM Completeness 98.88%
CheckM Contamination 0.0%
CheckM Strain Heterogeneity 0.0
5S Count 3
16S Count 2
23S Count 1
tRNA Count 17
Contig Count 55
N50 Contigs 65,581 bp
Longest Contig 213,871 bp
Scaffold Count 54
N50 Scaffolds 65,581 bp
Longest Scaffold 213,871 bp
Genome Size 2,138,493 bp
Protein Count 2,045
Coding Density 83.03%
GC Percentage 43.42%
Ambiguous Bases N/A
GTDB representative of species True
NCBI Metadata
Assembly Level Scaffold
Assembly Name ASM68660v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN02743354
Country None
Date 2014-05-08
Genbank Assembly Accession GCA_000686605.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source dental plaque
Latitude Longitude None
Molecule Count N/A
CDS Count 2,072
Refseq Category representative genome
Seq Rel Date 2014/05/08
Spanned Gaps 1
Species Taxid 1310
SSU Count 5
Submitter DOE Joint Genome Institute
Taxid 1123317
Total Gap Length 554
Translation Table 11
tRNA Count (total) 34
Type Material assembly from type material
Unspanned Gaps 0
Version Status latest
WGS Master JMLC00000000.1