Methanoperedens nitroreducens
Isolate HQ 5S/16S/23S 19 tRNAs
Taxonomic Information
GTDB Taxonomy d__Archaea; p__Halobacteriota; c__Methanosarcinia; o__Methanosarcinales; f__Methanoperedenaceae; g__Methanoperedens; s__Methanoperedens nitroreducens
Filtered NCBI Taxonomy d__Archaea; p__Euryarchaeota; c__Methanomicrobia; o__Methanosarcinales; f__Candidatus Methanoperedenaceae; g__Candidatus Methanoperedens; s__Candidatus Methanoperedens nitroreducens
Unfiltered NCBI Taxonomy d__Archaea; p__Euryarchaeota; x__Stenosarchaea group; c__Methanomicrobia; o__Methanosarcinales; f__Candidatus Methanoperedenaceae; g__Candidatus Methanoperedens; s__Candidatus Methanoperedens nitroreducens
NCBI Strain Identifiers ANME-2d
GTDB Type Material Designation not type material
GTDB Representative of Species True (2 genomes in species cluster)
Genome Characteristics
CheckM Completeness 99.67%
CheckM Contamination 1.31%
CheckM Strain Heterogeneity 0.0
5S Count 1
16S Count 1
23S Count 1
tRNA Count 19
Contig Count 72
N50 Contigs 60,319 bp
Longest Contig 198,058 bp
Scaffold Count 10
N50 Scaffolds 545,726 bp
Longest Scaffold 721,326 bp
Genome Size 3,203,386 bp
Protein Count 3,422
Coding Density 88.25%
GC Percentage 43.22%
Ambiguous Bases 1
GTDB representative of species True
NCBI Metadata
Assembly Level Scaffold
Assembly Name ANME2D V10
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN02713514
Country Australia
Date 2014-5-6
Genbank Assembly Accession GCA_000685155.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source freshwater lake sediment grown in bioreactor fed with nitrate; ammonium and methane
Latitude Longitude 27.499063 S 153.016382 E
Molecule Count N/A
CDS Count 3,324
Refseq Category na
Seq Rel Date 2014/05/06
Spanned Gaps 62
Species Taxid 1392998
SSU Count 1
Submitter University of Queensland
Taxid 1392998
Total Gap Length 6012
Translation Table 11
tRNA Count (total) 44
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master JMIY00000000.1