Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli
NCBI Strain Identifiers O25b-ST131;IEH71520
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_003697165.2)
Genome Characteristics
CheckM Completeness 99.97%
CheckM Contamination 0.38%
CheckM Strain Heterogeneity 0.0
5S Count 7
16S Count 4
23S Count 2
tRNA Count 20
Contig Count 202
N50 Contigs 67,135 bp
Longest Contig 191,471 bp
Scaffold Count 202
N50 Scaffolds 67,135 bp
Longest Scaffold 191,471 bp
Genome Size 5,153,432 bp
Protein Count 4,957
Coding Density 87.99%
GC Percentage 50.79%
Ambiguous Bases N/A
GTDB representative GCA_003697165.2
GTDB representative of species False
NCBI Metadata
Assembly Level Contig
Assembly Name IEH71520_1.0
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN02726231
Country USA: Curry County; Oregon
Date 2014-05-05
Genbank Assembly Accession GCA_000681435.1
Genome Category Isolate
Genome Representation full
Isolate IEH71520
Isolation Source environment
Latitude Longitude 42.4800 N 124.1367 W
Molecule Count N/A
CDS Count 5,428
Refseq Category na
Seq Rel Date 2014/05/05
Spanned Gaps 0
Species Taxid 562
SSU Count 9
Submitter Institute of Environmental Health
Taxid 562
Total Gap Length 0
Translation Table 11
tRNA Count (total) 77
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master JJNV00000000.1