Mycobacterium tuberculosis
Isolate HQ 16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Actinobacteriota; c__Actinomycetia; o__Mycobacteriales; f__Mycobacteriaceae; g__Mycobacterium; s__Mycobacterium tuberculosis
Filtered NCBI Taxonomy d__Bacteria; p__Actinobacteria; c__Actinobacteria; o__Corynebacteriales; f__Mycobacteriaceae; g__Mycobacterium; s__Mycobacterium tuberculosis
Unfiltered NCBI Taxonomy d__Bacteria; x__Terrabacteria group; p__Actinobacteria; c__Actinobacteria; o__Corynebacteriales; f__Mycobacteriaceae; g__Mycobacterium; x__Mycobacterium tuberculosis complex; s__Mycobacterium tuberculosis; x__Mycobacterium tuberculosis BTB03-143
NCBI Strain Identifiers BTB03-143
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_000195955.2)
Genome Characteristics
CheckM Completeness 99.94%
CheckM Contamination 0.0%
CheckM Strain Heterogeneity 0.0
5S Count 0
16S Count 1
23S Count 1
tRNA Count 20
Contig Count 27
N50 Contigs 290,459 bp
Longest Contig 886,309 bp
Scaffold Count 10
N50 Scaffolds 3,931,585 bp
Longest Scaffold 3,931,585 bp
Genome Size 4,425,282 bp
Protein Count 4,100
Coding Density 89.90%
GC Percentage 65.59%
Ambiguous Bases N/A
GTDB representative GCA_000195955.2
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name Myco_tube_BTB03-143_V1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN02414865
Country Sweden
Date 2014-5-3
Genbank Assembly Accession GCA_000677555.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source bronchial
Latitude Longitude None
Molecule Count N/A
CDS Count 4,251
Refseq Category na
Seq Rel Date 2014/05/03
Spanned Gaps 17
Species Taxid 1773
SSU Count 1
Submitter Broad Institute
Taxid 1423449
Total Gap Length 22773
Translation Table 11
tRNA Count (total) 45
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master JKGT00000000.1