Mycobacterium tuberculosis
Isolate HQ 16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Actinobacteriota; c__Actinomycetia; o__Mycobacteriales; f__Mycobacteriaceae; g__Mycobacterium; s__Mycobacterium tuberculosis
Filtered NCBI Taxonomy d__Bacteria; p__Actinobacteria; c__Actinobacteria; o__Corynebacteriales; f__Mycobacteriaceae; g__Mycobacterium; s__Mycobacterium tuberculosis
Unfiltered NCBI Taxonomy d__Bacteria; x__Terrabacteria group; p__Actinobacteria; c__Actinobacteria; o__Corynebacteriales; f__Mycobacteriaceae; g__Mycobacterium; x__Mycobacterium tuberculosis complex; s__Mycobacterium tuberculosis; x__Mycobacterium tuberculosis TB_RSA155
NCBI Strain Identifiers TB_RSA155
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_000195955.2)
Genome Characteristics
CheckM Completeness 99.69%
CheckM Contamination 0.33%
CheckM Strain Heterogeneity 100.0
5S Count 0
16S Count 1
23S Count 1
tRNA Count 20
Contig Count 81
N50 Contigs 124,148 bp
Longest Contig 290,185 bp
Scaffold Count 78
N50 Scaffolds 127,504 bp
Longest Scaffold 290,185 bp
Genome Size 4,390,526 bp
Protein Count 4,093
Coding Density 90.32%
GC Percentage 65.60%
Ambiguous Bases N/A
GTDB representative GCA_000195955.2
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name Myco_tube_TB_RSA155_V1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN02403596
Country South Africa
Date 2014-5-3
Genbank Assembly Accession GCA_000676355.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source None
Latitude Longitude None
Molecule Count N/A
CDS Count 4,270
Refseq Category na
Seq Rel Date 2014/05/03
Spanned Gaps 3
Species Taxid 1773
SSU Count 1
Submitter Broad Institute
Taxid 1422071
Total Gap Length 905
Translation Table 11
tRNA Count (total) 45
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master JKRS00000000.1