Ralstonia pseudosolanacearum
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Burkholderiales; f__Burkholderiaceae; g__Ralstonia; s__Ralstonia pseudosolanacearum
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Betaproteobacteria; o__Burkholderiales; f__Burkholderiaceae; g__Ralstonia; s__Ralstonia solanacearum
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Betaproteobacteria; o__Burkholderiales; f__Burkholderiaceae; g__Ralstonia; s__Ralstonia solanacearum; x__Ralstonia solanacearum Rs-09-161
NCBI Strain Identifiers Rs-09-161
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_003999715.1)
Genome Characteristics
CheckM Completeness 99.25%
CheckM Contamination 0.0%
CheckM Strain Heterogeneity 0.0
5S Count 1
16S Count 1
23S Count 2
tRNA Count 20
Contig Count 308
N50 Contigs 79,465 bp
Longest Contig 238,412 bp
Scaffold Count 75
N50 Scaffolds 3,688,450 bp
Longest Scaffold 3,688,450 bp
Genome Size 5,757,917 bp
Protein Count 5,026
Coding Density 85.62%
GC Percentage 66.82%
Ambiguous Bases 17
GTDB representative GCA_003999715.1
GTDB representative of species False
NCBI Metadata
Assembly Level Chromosome
Assembly Name RALSO161-G1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN02444146
Country India
Date 2014-05-02
Genbank Assembly Accession GCA_000671335.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source eggplant
Latitude Longitude None
Molecule Count 2
CDS Count 5,113
Refseq Category na
Seq Rel Date 2014/05/02
Spanned Gaps 235
Species Taxid 305
SSU Count 1
Submitter ICAR Research Complex for Goa
Taxid 1394180
Total Gap Length 23500
Translation Table 11
tRNA Count (total) 53
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master JHBO00000000.1