Mycobacterium tuberculosis
Isolate HQ 16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Actinobacteriota; c__Actinomycetia; o__Mycobacteriales; f__Mycobacteriaceae; g__Mycobacterium; s__Mycobacterium tuberculosis
Filtered NCBI Taxonomy d__Bacteria; p__Actinobacteria; c__Actinobacteria; o__Corynebacteriales; f__Mycobacteriaceae; g__Mycobacterium; s__Mycobacterium tuberculosis
Unfiltered NCBI Taxonomy d__Bacteria; x__Terrabacteria group; p__Actinobacteria; c__Actinobacteria; o__Corynebacteriales; f__Mycobacteriaceae; g__Mycobacterium; x__Mycobacterium tuberculosis complex; s__Mycobacterium tuberculosis; x__Mycobacterium tuberculosis KT-0012
NCBI Strain Identifiers KT-0012
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_000195955.2)
Genome Characteristics
CheckM Completeness 99.94%
CheckM Contamination 0.0%
CheckM Strain Heterogeneity 0.0
5S Count 0
16S Count 1
23S Count 1
tRNA Count 20
Contig Count 55
N50 Contigs 192,655 bp
Longest Contig 302,024 bp
Scaffold Count 41
N50 Scaffolds 292,978 bp
Longest Scaffold 389,068 bp
Genome Size 4,394,026 bp
Protein Count 4,086
Coding Density 89.91%
GC Percentage 65.59%
Ambiguous Bases N/A
GTDB representative GCA_000195955.2
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name Myco_tube_KT-_0012_V1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN02398695
Country South Korea
Date 2014-5-1
Genbank Assembly Accession GCA_000669355.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source None
Latitude Longitude None
Molecule Count N/A
CDS Count 4,264
Refseq Category na
Seq Rel Date 2014/05/01
Spanned Gaps 14
Species Taxid 1773
SSU Count 1
Submitter Broad Institute
Taxid 1417010
Total Gap Length 17978
Translation Table 11
tRNA Count (total) 45
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master JLNR00000000.1