Mycobacterium tuberculosis
Isolate HQ 16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Actinobacteriota; c__Actinomycetia; o__Mycobacteriales; f__Mycobacteriaceae; g__Mycobacterium; s__Mycobacterium tuberculosis
Filtered NCBI Taxonomy d__Bacteria; p__Actinobacteria; c__Actinobacteria; o__Corynebacteriales; f__Mycobacteriaceae; g__Mycobacterium; s__Mycobacterium tuberculosis
Unfiltered NCBI Taxonomy d__Bacteria; x__Terrabacteria group; p__Actinobacteria; c__Actinobacteria; o__Corynebacteriales; f__Mycobacteriaceae; g__Mycobacterium; x__Mycobacterium tuberculosis complex; s__Mycobacterium tuberculosis; x__Mycobacterium tuberculosis MAL020194
NCBI Strain Identifiers MAL020194
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_000195955.2)
Genome Characteristics
CheckM Completeness 99.94%
CheckM Contamination 0.0%
CheckM Strain Heterogeneity 0.0
5S Count 0
16S Count 1
23S Count 1
tRNA Count 20
Contig Count 29
N50 Contigs 339,748 bp
Longest Contig 462,881 bp
Scaffold Count 8
N50 Scaffolds 2,635,243 bp
Longest Scaffold 2,635,243 bp
Genome Size 4,426,285 bp
Protein Count 4,093
Coding Density 89.70%
GC Percentage 65.58%
Ambiguous Bases N/A
GTDB representative GCA_000195955.2
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name Myco_tube_MAL020194_V1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN02231179
Country Mali: Point G Hospital
Date 2014-5-1
Genbank Assembly Accession GCA_000667545.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source Bodily fluid
Latitude Longitude None
Molecule Count N/A
CDS Count 4,238
Refseq Category na
Seq Rel Date 2014/05/01
Spanned Gaps 21
Species Taxid 1773
SSU Count 1
Submitter Broad Institute
Taxid 1354105
Total Gap Length 27640
Translation Table 11
tRNA Count (total) 45
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master JKYG00000000.1