Mycobacterium tuberculosis
Isolate HQ 16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Actinobacteriota; c__Actinomycetia; o__Mycobacteriales; f__Mycobacteriaceae; g__Mycobacterium; s__Mycobacterium tuberculosis
Filtered NCBI Taxonomy d__Bacteria; p__Actinobacteria; c__Actinobacteria; o__Corynebacteriales; f__Mycobacteriaceae; g__Mycobacterium; s__Mycobacterium tuberculosis
Unfiltered NCBI Taxonomy d__Bacteria; x__Terrabacteria group; p__Actinobacteria; c__Actinobacteria; o__Corynebacteriales; f__Mycobacteriaceae; g__Mycobacterium; x__Mycobacterium tuberculosis complex; s__Mycobacterium tuberculosis; x__Mycobacterium tuberculosis M2142
NCBI Strain Identifiers M2142
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_000195955.2)
Genome Characteristics
CheckM Completeness 99.94%
CheckM Contamination 0.0%
CheckM Strain Heterogeneity 0.0
5S Count 0
16S Count 1
23S Count 1
tRNA Count 20
Contig Count 84
N50 Contigs 122,263 bp
Longest Contig 302,849 bp
Scaffold Count 79
N50 Scaffolds 151,201 bp
Longest Scaffold 302,849 bp
Genome Size 4,424,869 bp
Protein Count 4,128
Coding Density 90.26%
GC Percentage 65.59%
Ambiguous Bases N/A
GTDB representative GCA_000195955.2
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name Myco_tube_M2142_V1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN02599134
Country India: Tiruvallur
Date 2014-5-1
Genbank Assembly Accession GCA_000664965.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source Sputum
Latitude Longitude None
Molecule Count N/A
CDS Count 4,273
Refseq Category na
Seq Rel Date 2014/05/01
Spanned Gaps 5
Species Taxid 1773
SSU Count 1
Submitter Broad Institute
Taxid 1448788
Total Gap Length 2189
Translation Table 11
tRNA Count (total) 45
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master JKJK00000000.1