Mycobacterium tuberculosis
Isolate HQ 16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Actinobacteriota; c__Actinomycetia; o__Mycobacteriales; f__Mycobacteriaceae; g__Mycobacterium; s__Mycobacterium tuberculosis
Filtered NCBI Taxonomy d__Bacteria; p__Actinobacteria; c__Actinobacteria; o__Corynebacteriales; f__Mycobacteriaceae; g__Mycobacterium; s__Mycobacterium tuberculosis
Unfiltered NCBI Taxonomy d__Bacteria; x__Terrabacteria group; p__Actinobacteria; c__Actinobacteria; o__Corynebacteriales; f__Mycobacteriaceae; g__Mycobacterium; x__Mycobacterium tuberculosis complex; s__Mycobacterium tuberculosis; x__Mycobacterium tuberculosis M2130
NCBI Strain Identifiers M2130
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_000195955.2)
Genome Characteristics
CheckM Completeness 99.94%
CheckM Contamination 0.0%
CheckM Strain Heterogeneity 0.0
5S Count 0
16S Count 1
23S Count 1
tRNA Count 20
Contig Count 75
N50 Contigs 126,254 bp
Longest Contig 304,359 bp
Scaffold Count 71
N50 Scaffolds 131,685 bp
Longest Scaffold 304,359 bp
Genome Size 4,394,022 bp
Protein Count 4,090
Coding Density 90.26%
GC Percentage 65.60%
Ambiguous Bases N/A
GTDB representative GCA_000195955.2
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name Myco_tube_M2130_V1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN02599103
Country India: Tiruvallur
Date 2014-5-1
Genbank Assembly Accession GCA_000664405.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source Sputum
Latitude Longitude None
Molecule Count N/A
CDS Count 4,267
Refseq Category na
Seq Rel Date 2014/05/01
Spanned Gaps 4
Species Taxid 1773
SSU Count 1
Submitter Broad Institute
Taxid 1448757
Total Gap Length 1275
Translation Table 11
tRNA Count (total) 45
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master JKKO00000000.1