Mycobacterium tuberculosis
Isolate HQ 16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Actinobacteriota; c__Actinomycetia; o__Mycobacteriales; f__Mycobacteriaceae; g__Mycobacterium; s__Mycobacterium tuberculosis
Filtered NCBI Taxonomy d__Bacteria; p__Actinobacteria; c__Actinobacteria; o__Corynebacteriales; f__Mycobacteriaceae; g__Mycobacterium; s__Mycobacterium tuberculosis
Unfiltered NCBI Taxonomy d__Bacteria; x__Terrabacteria group; p__Actinobacteria; c__Actinobacteria; o__Corynebacteriales; f__Mycobacteriaceae; g__Mycobacterium; x__Mycobacterium tuberculosis complex; s__Mycobacterium tuberculosis; x__Mycobacterium tuberculosis M1893
NCBI Strain Identifiers M1893
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_000195955.2)
Genome Characteristics
CheckM Completeness 99.94%
CheckM Contamination 0.17%
CheckM Strain Heterogeneity 100.0
5S Count 0
16S Count 1
23S Count 1
tRNA Count 20
Contig Count 119
N50 Contigs 79,729 bp
Longest Contig 235,369 bp
Scaffold Count 101
N50 Scaffolds 97,568 bp
Longest Scaffold 235,369 bp
Genome Size 4,416,857 bp
Protein Count 4,133
Coding Density 90.34%
GC Percentage 65.59%
Ambiguous Bases N/A
GTDB representative GCA_000195955.2
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name Myco_tube_M1893_V1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN02599068
Country India: Tiruvallur
Date 2014-5-1
Genbank Assembly Accession GCA_000663765.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source Sputum
Latitude Longitude None
Molecule Count N/A
CDS Count 4,296
Refseq Category na
Seq Rel Date 2014/05/01
Spanned Gaps 18
Species Taxid 1773
SSU Count 1
Submitter Broad Institute
Taxid 1448722
Total Gap Length 3992
Translation Table 11
tRNA Count (total) 45
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master JKLW00000000.1