Mycobacterium tuberculosis
Isolate HQ 16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Actinobacteriota; c__Actinomycetia; o__Mycobacteriales; f__Mycobacteriaceae; g__Mycobacterium; s__Mycobacterium tuberculosis
Filtered NCBI Taxonomy d__Bacteria; p__Actinobacteria; c__Actinobacteria; o__Corynebacteriales; f__Mycobacteriaceae; g__Mycobacterium; s__Mycobacterium tuberculosis
Unfiltered NCBI Taxonomy d__Bacteria; x__Terrabacteria group; p__Actinobacteria; c__Actinobacteria; o__Corynebacteriales; f__Mycobacteriaceae; g__Mycobacterium; x__Mycobacterium tuberculosis complex; s__Mycobacterium tuberculosis; x__Mycobacterium tuberculosis TKK-01-0079
NCBI Strain Identifiers TKK-01-0079
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_000195955.2)
Genome Characteristics
CheckM Completeness 99.94%
CheckM Contamination 0.0%
CheckM Strain Heterogeneity 0.0
5S Count 0
16S Count 1
23S Count 1
tRNA Count 20
Contig Count 45
N50 Contigs 193,050 bp
Longest Contig 798,356 bp
Scaffold Count 7
N50 Scaffolds 3,740,725 bp
Longest Scaffold 3,740,725 bp
Genome Size 4,421,863 bp
Protein Count 4,089
Coding Density 89.54%
GC Percentage 65.59%
Ambiguous Bases N/A
GTDB representative GCA_000195955.2
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name Myco_tube_TKK-01-0079_V1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN02053810
Country South Africa: Ngwelezane
Date 2014-4-30
Genbank Assembly Accession GCA_000661575.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source Bodily fluid
Latitude Longitude None
Molecule Count N/A
CDS Count 4,260
Refseq Category na
Seq Rel Date 2014/04/30
Spanned Gaps 38
Species Taxid 1773
SSU Count 1
Submitter Broad Institute
Taxid 1324287
Total Gap Length 33467
Translation Table 11
tRNA Count (total) 45
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master JLWU00000000.1