Mycobacterium tuberculosis
Isolate HQ 16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Actinobacteriota; c__Actinomycetia; o__Mycobacteriales; f__Mycobacteriaceae; g__Mycobacterium; s__Mycobacterium tuberculosis
Filtered NCBI Taxonomy d__Bacteria; p__Actinobacteria; c__Actinobacteria; o__Corynebacteriales; f__Mycobacteriaceae; g__Mycobacterium; s__Mycobacterium tuberculosis
Unfiltered NCBI Taxonomy d__Bacteria; x__Terrabacteria group; p__Actinobacteria; c__Actinobacteria; o__Corynebacteriales; f__Mycobacteriaceae; g__Mycobacterium; x__Mycobacterium tuberculosis complex; s__Mycobacterium tuberculosis; x__Mycobacterium tuberculosis TKK-01-0047
NCBI Strain Identifiers TKK-01-0047
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_000195955.2)
Genome Characteristics
CheckM Completeness 99.94%
CheckM Contamination 0.0%
CheckM Strain Heterogeneity 0.0
5S Count 0
16S Count 1
23S Count 1
tRNA Count 20
Contig Count 39
N50 Contigs 290,658 bp
Longest Contig 488,293 bp
Scaffold Count 10
N50 Scaffolds 1,221,317 bp
Longest Scaffold 2,156,925 bp
Genome Size 4,416,226 bp
Protein Count 4,067
Coding Density 89.48%
GC Percentage 65.60%
Ambiguous Bases N/A
GTDB representative GCA_000195955.2
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name Myco_tube_TKK-01-0047_V1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN02053780
Country South Africa: Rietvlei
Date 2014-4-30
Genbank Assembly Accession GCA_000661005.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source Bodily fluid
Latitude Longitude None
Molecule Count N/A
CDS Count 4,250
Refseq Category na
Seq Rel Date 2014/04/30
Spanned Gaps 29
Species Taxid 1773
SSU Count 1
Submitter Broad Institute
Taxid 1324257
Total Gap Length 35773
Translation Table 11
tRNA Count (total) 45
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master JLYA00000000.1