Mycobacterium tuberculosis
Isolate HQ 16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Actinobacteriota; c__Actinomycetia; o__Mycobacteriales; f__Mycobacteriaceae; g__Mycobacterium; s__Mycobacterium tuberculosis
Filtered NCBI Taxonomy d__Bacteria; p__Actinobacteria; c__Actinobacteria; o__Corynebacteriales; f__Mycobacteriaceae; g__Mycobacterium; s__Mycobacterium tuberculosis
Unfiltered NCBI Taxonomy d__Bacteria; x__Terrabacteria group; p__Actinobacteria; c__Actinobacteria; o__Corynebacteriales; f__Mycobacteriaceae; g__Mycobacterium; x__Mycobacterium tuberculosis complex; s__Mycobacterium tuberculosis; x__Mycobacterium tuberculosis NRITLD59
NCBI Strain Identifiers NRITLD59
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_000195955.2)
Genome Characteristics
CheckM Completeness 99.94%
CheckM Contamination 0.33%
CheckM Strain Heterogeneity 100.0
5S Count 0
16S Count 1
23S Count 1
tRNA Count 20
Contig Count 75
N50 Contigs 127,384 bp
Longest Contig 293,679 bp
Scaffold Count 57
N50 Scaffolds 179,365 bp
Longest Scaffold 364,427 bp
Genome Size 4,417,270 bp
Protein Count 4,132
Coding Density 89.98%
GC Percentage 65.56%
Ambiguous Bases N/A
GTDB representative GCA_000195955.2
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name Myco_tube_NRITLD59_V1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN02628493
Country Iran
Date 2014-4-30
Genbank Assembly Accession GCA_000657315.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source None
Latitude Longitude None
Molecule Count N/A
CDS Count 4,290
Refseq Category na
Seq Rel Date 2014/04/30
Spanned Gaps 18
Species Taxid 1773
SSU Count 1
Submitter Broad Institute
Taxid 1455278
Total Gap Length 13669
Translation Table 11
tRNA Count (total) 45
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master JJSU00000000.1