Mycobacterium tuberculosis
Isolate HQ 16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Actinobacteriota; c__Actinomycetia; o__Mycobacteriales; f__Mycobacteriaceae; g__Mycobacterium; s__Mycobacterium tuberculosis
Filtered NCBI Taxonomy d__Bacteria; p__Actinobacteria; c__Actinobacteria; o__Corynebacteriales; f__Mycobacteriaceae; g__Mycobacterium; s__Mycobacterium tuberculosis
Unfiltered NCBI Taxonomy d__Bacteria; x__Terrabacteria group; p__Actinobacteria; c__Actinobacteria; o__Corynebacteriales; f__Mycobacteriaceae; g__Mycobacterium; x__Mycobacterium tuberculosis complex; s__Mycobacterium tuberculosis; x__Mycobacterium tuberculosis NRITLD51
NCBI Strain Identifiers NRITLD51
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_000195955.2)
Genome Characteristics
CheckM Completeness 99.94%
CheckM Contamination 0.33%
CheckM Strain Heterogeneity 100.0
5S Count 0
16S Count 1
23S Count 1
tRNA Count 20
Contig Count 75
N50 Contigs 125,639 bp
Longest Contig 294,271 bp
Scaffold Count 63
N50 Scaffolds 163,586 bp
Longest Scaffold 294,271 bp
Genome Size 4,383,257 bp
Protein Count 4,117
Coding Density 90.01%
GC Percentage 65.55%
Ambiguous Bases N/A
GTDB representative GCA_000195955.2
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name Myco_tube_NRITLD51_V1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN02628485
Country Iran
Date 2014-4-30
Genbank Assembly Accession GCA_000657195.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source None
Latitude Longitude None
Molecule Count N/A
CDS Count 4,278
Refseq Category na
Seq Rel Date 2014/04/30
Spanned Gaps 12
Species Taxid 1773
SSU Count 1
Submitter Broad Institute
Taxid 1455270
Total Gap Length 7112
Translation Table 11
tRNA Count (total) 45
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master JJTA00000000.1