Mycobacterium tuberculosis
Isolate HQ 16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Actinobacteriota; c__Actinomycetia; o__Mycobacteriales; f__Mycobacteriaceae; g__Mycobacterium; s__Mycobacterium tuberculosis
Filtered NCBI Taxonomy d__Bacteria; p__Actinobacteria; c__Actinobacteria; o__Corynebacteriales; f__Mycobacteriaceae; g__Mycobacterium; s__Mycobacterium tuberculosis
Unfiltered NCBI Taxonomy d__Bacteria; x__Terrabacteria group; p__Actinobacteria; c__Actinobacteria; o__Corynebacteriales; f__Mycobacteriaceae; g__Mycobacterium; x__Mycobacterium tuberculosis complex; s__Mycobacterium tuberculosis; x__Mycobacterium tuberculosis TKK_04_0132
NCBI Strain Identifiers TKK_04_0132
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_000195955.2)
Genome Characteristics
CheckM Completeness 99.94%
CheckM Contamination 0.0%
CheckM Strain Heterogeneity 0.0
5S Count 0
16S Count 1
23S Count 1
tRNA Count 20
Contig Count 3
N50 Contigs 2,264,321 bp
Longest Contig 2,264,321 bp
Scaffold Count 1
N50 Scaffolds 4,400,961 bp
Longest Scaffold 4,400,961 bp
Genome Size 4,400,961 bp
Protein Count 4,072
Coding Density 90.40%
GC Percentage 65.61%
Ambiguous Bases N/A
GTDB representative GCA_000195955.2
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name Myco_tube_TKK_04_0132_V1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN02586087
Country South Africa: FOSA Hospital
Date 2014-4-30
Genbank Assembly Accession GCA_000656795.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source sputum
Latitude Longitude None
Molecule Count N/A
CDS Count 4,228
Refseq Category na
Seq Rel Date 2014/04/30
Spanned Gaps 2
Species Taxid 1773
SSU Count 1
Submitter Broad Institute
Taxid 1448592
Total Gap Length 700
Translation Table 11
tRNA Count (total) 45
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master JJTW00000000.1