Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Actinobacteriota; c__Actinomycetia; o__Mycobacteriales; f__Mycobacteriaceae; g__Mycobacterium; s__Mycobacterium avium
Filtered NCBI Taxonomy d__Bacteria; p__Actinobacteria; c__Actinobacteria; o__Corynebacteriales; f__Mycobacteriaceae; g__Mycobacterium; s__Mycobacterium avium
Unfiltered NCBI Taxonomy d__Bacteria; x__Terrabacteria group; p__Actinobacteria; c__Actinobacteria; o__Corynebacteriales; f__Mycobacteriaceae; g__Mycobacterium; x__Mycobacterium avium complex (MAC); s__Mycobacterium avium; x__Mycobacterium avium XTB13-223
NCBI Strain Identifiers XTB13-223
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_000174035.1)
Genome Characteristics
CheckM Completeness 99.94%
CheckM Contamination 0.0%
CheckM Strain Heterogeneity 0.0
5S Count 0
16S Count 1
23S Count 1
tRNA Count 20
Contig Count 33
N50 Contigs 393,513 bp
Longest Contig 1,049,071 bp
Scaffold Count 4
N50 Scaffolds 3,597,248 bp
Longest Scaffold 3,597,248 bp
Genome Size 5,130,253 bp
Protein Count 4,781
Coding Density 90.46%
GC Percentage 69.21%
Ambiguous Bases N/A
GTDB representative GCA_000174035.1
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name Myco_tube_XTB13-223_V1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN02419652
Country Belarus
Date 2014-4-30
Genbank Assembly Accession GCA_000655755.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source Excreted bodily substance
Latitude Longitude None
Molecule Count N/A
CDS Count 4,753
Refseq Category na
Seq Rel Date 2014/04/30
Spanned Gaps 29
Species Taxid 1764
SSU Count 1
Submitter Broad Institute
Taxid 1427296
Total Gap Length 46340
Translation Table 11
tRNA Count (total) 48
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master JLIC00000000.1