Mycobacterium tuberculosis
Isolate HQ 16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Actinobacteriota; c__Actinomycetia; o__Mycobacteriales; f__Mycobacteriaceae; g__Mycobacterium; s__Mycobacterium tuberculosis
Filtered NCBI Taxonomy d__Bacteria; p__Actinobacteria; c__Actinobacteria; o__Corynebacteriales; f__Mycobacteriaceae; g__Mycobacterium; s__Mycobacterium tuberculosis
Unfiltered NCBI Taxonomy d__Bacteria; x__Terrabacteria group; p__Actinobacteria; c__Actinobacteria; o__Corynebacteriales; f__Mycobacteriaceae; g__Mycobacterium; x__Mycobacterium tuberculosis complex; s__Mycobacterium tuberculosis; x__Mycobacterium tuberculosis XTB13-199
NCBI Strain Identifiers XTB13-199
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_000195955.2)
Genome Characteristics
CheckM Completeness 99.94%
CheckM Contamination 0.0%
CheckM Strain Heterogeneity 0.0
5S Count 0
16S Count 1
23S Count 2
tRNA Count 20
Contig Count 27
N50 Contigs 463,477 bp
Longest Contig 1,042,726 bp
Scaffold Count 20
N50 Scaffolds 631,519 bp
Longest Scaffold 1,065,940 bp
Genome Size 4,405,292 bp
Protein Count 4,069
Coding Density 90.23%
GC Percentage 65.60%
Ambiguous Bases N/A
GTDB representative GCA_000195955.2
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name Myco_tube_XTB13-199_V1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN02419633
Country Belarus
Date 2014-4-30
Genbank Assembly Accession GCA_000655415.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source Excreted bodily substance
Latitude Longitude None
Molecule Count N/A
CDS Count 4,235
Refseq Category na
Seq Rel Date 2014/04/30
Spanned Gaps 7
Species Taxid 1773
SSU Count 1
Submitter Broad Institute
Taxid 1427277
Total Gap Length 7440
Translation Table 11
tRNA Count (total) 45
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master JLIU00000000.1