Mycobacterium tuberculosis
Isolate HQ 16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Actinobacteriota; c__Actinomycetia; o__Mycobacteriales; f__Mycobacteriaceae; g__Mycobacterium; s__Mycobacterium tuberculosis
Filtered NCBI Taxonomy d__Bacteria; p__Actinobacteria; c__Actinobacteria; o__Corynebacteriales; f__Mycobacteriaceae; g__Mycobacterium; s__Mycobacterium tuberculosis
Unfiltered NCBI Taxonomy d__Bacteria; x__Terrabacteria group; p__Actinobacteria; c__Actinobacteria; o__Corynebacteriales; f__Mycobacteriaceae; g__Mycobacterium; x__Mycobacterium tuberculosis complex; s__Mycobacterium tuberculosis; x__Mycobacterium tuberculosis TKK_04_0098
NCBI Strain Identifiers TKK_04_0098
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_000195955.2)
Genome Characteristics
CheckM Completeness 99.94%
CheckM Contamination 0.0%
CheckM Strain Heterogeneity 0.0
5S Count 0
16S Count 1
23S Count 1
tRNA Count 20
Contig Count 92
N50 Contigs 123,256 bp
Longest Contig 230,518 bp
Scaffold Count 86
N50 Scaffolds 123,256 bp
Longest Scaffold 241,349 bp
Genome Size 4,392,147 bp
Protein Count 4,112
Coding Density 90.29%
GC Percentage 65.59%
Ambiguous Bases N/A
GTDB representative GCA_000195955.2
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name Myco_tube_TKK_04_0098_V1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN02586062
Country South Africa: Thulasizwe Hopsital
Date 2014-4-29
Genbank Assembly Accession GCA_000653975.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source sputum
Latitude Longitude None
Molecule Count N/A
CDS Count 4,291
Refseq Category na
Seq Rel Date 2014/04/29
Spanned Gaps 6
Species Taxid 1773
SSU Count 1
Submitter Broad Institute
Taxid 1448567
Total Gap Length 1510
Translation Table 11
tRNA Count (total) 45
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master JJUS00000000.1