Mycobacterium tuberculosis
Isolate HQ 16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Actinobacteriota; c__Actinomycetia; o__Mycobacteriales; f__Mycobacteriaceae; g__Mycobacterium; s__Mycobacterium tuberculosis
Filtered NCBI Taxonomy d__Bacteria; p__Actinobacteria; c__Actinobacteria; o__Corynebacteriales; f__Mycobacteriaceae; g__Mycobacterium; s__Mycobacterium tuberculosis
Unfiltered NCBI Taxonomy d__Bacteria; x__Terrabacteria group; p__Actinobacteria; c__Actinobacteria; o__Corynebacteriales; f__Mycobacteriaceae; g__Mycobacterium; x__Mycobacterium tuberculosis complex; s__Mycobacterium tuberculosis; x__Mycobacterium tuberculosis TKK_05SA_0041
NCBI Strain Identifiers TKK_05SA_0041
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_000195955.2)
Genome Characteristics
CheckM Completeness 99.94%
CheckM Contamination 0.33%
CheckM Strain Heterogeneity 100.0
5S Count 0
16S Count 1
23S Count 1
tRNA Count 20
Contig Count 72
N50 Contigs 131,298 bp
Longest Contig 235,424 bp
Scaffold Count 69
N50 Scaffolds 131,298 bp
Longest Scaffold 235,424 bp
Genome Size 4,412,199 bp
Protein Count 4,101
Coding Density 90.35%
GC Percentage 65.62%
Ambiguous Bases N/A
GTDB representative GCA_000195955.2
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name Myco_tube_TKK_05SA_0041_V1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN02586039
Country South Africa: King Dinuzulu Hospital
Date 2014-4-29
Genbank Assembly Accession GCA_000653615.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source sputum
Latitude Longitude None
Molecule Count N/A
CDS Count 4,277
Refseq Category na
Seq Rel Date 2014/04/29
Spanned Gaps 3
Species Taxid 1773
SSU Count 1
Submitter Broad Institute
Taxid 1448544
Total Gap Length 531
Translation Table 11
tRNA Count (total) 45
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master JJVM00000000.1