Mycobacterium tuberculosis
Isolate HQ 16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Actinobacteriota; c__Actinomycetia; o__Mycobacteriales; f__Mycobacteriaceae; g__Mycobacterium; s__Mycobacterium tuberculosis
Filtered NCBI Taxonomy d__Bacteria; p__Actinobacteria; c__Actinobacteria; o__Corynebacteriales; f__Mycobacteriaceae; g__Mycobacterium; s__Mycobacterium tuberculosis
Unfiltered NCBI Taxonomy d__Bacteria; x__Terrabacteria group; p__Actinobacteria; c__Actinobacteria; o__Corynebacteriales; f__Mycobacteriaceae; g__Mycobacterium; x__Mycobacterium tuberculosis complex; s__Mycobacterium tuberculosis; x__Mycobacterium tuberculosis TKK_04_0086
NCBI Strain Identifiers TKK_04_0086
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_000195955.2)
Genome Characteristics
CheckM Completeness 99.94%
CheckM Contamination 0.0%
CheckM Strain Heterogeneity 0.0
5S Count 0
16S Count 1
23S Count 1
tRNA Count 20
Contig Count 18
N50 Contigs 745,005 bp
Longest Contig 1,262,402 bp
Scaffold Count 5
N50 Scaffolds 3,925,259 bp
Longest Scaffold 3,925,259 bp
Genome Size 4,406,632 bp
Protein Count 4,095
Coding Density 89.97%
GC Percentage 65.60%
Ambiguous Bases N/A
GTDB representative GCA_000195955.2
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name Myco_tube_TKK_04_0086_V1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN02585980
Country South Africa: Amakhabela Clinic
Date 2014-4-29
Genbank Assembly Accession GCA_000652835.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source None
Latitude Longitude None
Molecule Count N/A
CDS Count 4,237
Refseq Category na
Seq Rel Date 2014/04/29
Spanned Gaps 13
Species Taxid 1773
SSU Count 1
Submitter Broad Institute
Taxid 1448485
Total Gap Length 15420
Translation Table 11
tRNA Count (total) 45
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master JJXG00000000.1