Mycobacterium tuberculosis
Isolate HQ 16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Actinobacteriota; c__Actinomycetia; o__Mycobacteriales; f__Mycobacteriaceae; g__Mycobacterium; s__Mycobacterium tuberculosis
Filtered NCBI Taxonomy d__Bacteria; p__Actinobacteria; c__Actinobacteria; o__Corynebacteriales; f__Mycobacteriaceae; g__Mycobacterium; s__Mycobacterium tuberculosis
Unfiltered NCBI Taxonomy d__Bacteria; x__Terrabacteria group; p__Actinobacteria; c__Actinobacteria; o__Corynebacteriales; f__Mycobacteriaceae; g__Mycobacterium; x__Mycobacterium tuberculosis complex; s__Mycobacterium tuberculosis; x__Mycobacterium tuberculosis TKK_03_0116
NCBI Strain Identifiers TKK_03_0116
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_000195955.2)
Genome Characteristics
CheckM Completeness 99.61%
CheckM Contamination 0.0%
CheckM Strain Heterogeneity 0.0
5S Count 0
16S Count 1
23S Count 1
tRNA Count 20
Contig Count 36
N50 Contigs 375,564 bp
Longest Contig 816,181 bp
Scaffold Count 10
N50 Scaffolds 2,835,264 bp
Longest Scaffold 2,835,264 bp
Genome Size 4,499,402 bp
Protein Count 4,152
Coding Density 88.91%
GC Percentage 65.58%
Ambiguous Bases N/A
GTDB representative GCA_000195955.2
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name Myco_tube_TKK_03_0116_V1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN02585945
Country South Africa: Durban Chest Clinic
Date 2014-4-29
Genbank Assembly Accession GCA_000652195.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source None
Latitude Longitude None
Molecule Count N/A
CDS Count 4,269
Refseq Category na
Seq Rel Date 2014/04/29
Spanned Gaps 26
Species Taxid 1773
SSU Count 1
Submitter Broad Institute
Taxid 1448450
Total Gap Length 64723
Translation Table 11
tRNA Count (total) 45
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master JJYN00000000.1