Mycobacterium tuberculosis
Isolate HQ 16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Actinobacteriota; c__Actinomycetia; o__Mycobacteriales; f__Mycobacteriaceae; g__Mycobacterium; s__Mycobacterium tuberculosis
Filtered NCBI Taxonomy d__Bacteria; p__Actinobacteria; c__Actinobacteria; o__Corynebacteriales; f__Mycobacteriaceae; g__Mycobacterium; s__Mycobacterium tuberculosis
Unfiltered NCBI Taxonomy d__Bacteria; x__Terrabacteria group; p__Actinobacteria; c__Actinobacteria; o__Corynebacteriales; f__Mycobacteriaceae; g__Mycobacterium; x__Mycobacterium tuberculosis complex; s__Mycobacterium tuberculosis; x__Mycobacterium tuberculosis MD16571
NCBI Strain Identifiers MD16571
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_000195955.2)
Genome Characteristics
CheckM Completeness 99.94%
CheckM Contamination 0.0%
CheckM Strain Heterogeneity 0.0
5S Count 0
16S Count 1
23S Count 1
tRNA Count 20
Contig Count 93
N50 Contigs 99,901 bp
Longest Contig 303,131 bp
Scaffold Count 91
N50 Scaffolds 99,901 bp
Longest Scaffold 303,131 bp
Genome Size 4,378,494 bp
Protein Count 4,110
Coding Density 90.37%
GC Percentage 65.58%
Ambiguous Bases N/A
GTDB representative GCA_000195955.2
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name Myco_tube_MD16571_V1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN02584643
Country Moldova: Chisinau
Date 2014-4-29
Genbank Assembly Accession GCA_000650715.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source None
Latitude Longitude None
Molecule Count N/A
CDS Count 4,286
Refseq Category na
Seq Rel Date 2014/04/29
Spanned Gaps 2
Species Taxid 1773
SSU Count 1
Submitter Broad Institute
Taxid 1447492
Total Gap Length 486
Translation Table 11
tRNA Count (total) 45
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master JLEO00000000.1