Mycobacterium tuberculosis
Isolate HQ 16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Actinobacteriota; c__Actinomycetia; o__Mycobacteriales; f__Mycobacteriaceae; g__Mycobacterium; s__Mycobacterium tuberculosis
Filtered NCBI Taxonomy d__Bacteria; p__Actinobacteria; c__Actinobacteria; o__Corynebacteriales; f__Mycobacteriaceae; g__Mycobacterium; s__Mycobacterium tuberculosis
Unfiltered NCBI Taxonomy d__Bacteria; x__Terrabacteria group; p__Actinobacteria; c__Actinobacteria; o__Corynebacteriales; f__Mycobacteriaceae; g__Mycobacterium; x__Mycobacterium tuberculosis complex; s__Mycobacterium tuberculosis; x__Mycobacterium tuberculosis 1430BH
NCBI Strain Identifiers 1430BH
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_000195955.2)
Genome Characteristics
CheckM Completeness 99.94%
CheckM Contamination 0.0%
CheckM Strain Heterogeneity 0.0
5S Count 0
16S Count 1
23S Count 1
tRNA Count 20
Contig Count 96
N50 Contigs 95,737 bp
Longest Contig 303,527 bp
Scaffold Count 92
N50 Scaffolds 98,190 bp
Longest Scaffold 303,527 bp
Genome Size 4,419,070 bp
Protein Count 4,137
Coding Density 90.30%
GC Percentage 65.57%
Ambiguous Bases N/A
GTDB representative GCA_000195955.2
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name Myco_tube_1430BH_V1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN02567729
Country Romania
Date 2014-4-29
Genbank Assembly Accession GCA_000649555.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source sputum
Latitude Longitude None
Molecule Count N/A
CDS Count 4,305
Refseq Category na
Seq Rel Date 2014/04/29
Spanned Gaps 4
Species Taxid 1773
SSU Count 1
Submitter Broad Institute
Taxid 1438838
Total Gap Length 400
Translation Table 11
tRNA Count (total) 45
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master JKAR00000000.1