Salmonella enterica
Isolate HQ 5S/16S/23S 15 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Salmonella; s__Salmonella enterica
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Salmonella; s__Salmonella enterica
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Salmonella; s__Salmonella enterica; sb__Salmonella enterica subsp. enterica; x__Salmonella enterica subsp. enterica serovar Typhimurium; x__Salmonella enterica subsp. enterica serovar Typhimurium str. 108402
NCBI Strain Identifiers 108402
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_000006945.2)
Genome Characteristics
CheckM Completeness 99.9%
CheckM Contamination 0.76%
CheckM Strain Heterogeneity 33.33
5S Count 1
16S Count 1
23S Count 1
tRNA Count 15
Contig Count 192
N50 Contigs 67,631 bp
Longest Contig 294,238 bp
Scaffold Count 152
N50 Scaffolds 87,526 bp
Longest Scaffold 441,388 bp
Genome Size 4,980,076 bp
Protein Count 4,822
Coding Density 87.56%
GC Percentage 52.01%
Ambiguous Bases 46
GTDB representative GCA_000006945.2
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name 108402 Ver 1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN02692254
Country Israel
Date 2014-4-25
Genbank Assembly Accession GCA_000648495.2
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source host tissue
Latitude Longitude 32.04756 N 34.84521 E
Molecule Count N/A
CDS Count 5,116
Refseq Category na
Seq Rel Date 2014/04/25
Spanned Gaps 40
Species Taxid 28901
SSU Count 1
Submitter University of California Irvine
Taxid 1387341
Total Gap Length 2507
Translation Table 11
tRNA Count (total) 44
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master JHAH00000000.1