Staphylococcus aureus
Isolate HQ 16S/23S 19 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Firmicutes; c__Bacilli; o__Staphylococcales; f__Staphylococcaceae; g__Staphylococcus; s__Staphylococcus aureus
Filtered NCBI Taxonomy d__Bacteria; p__Firmicutes; c__Bacilli; o__Bacillales; f__Staphylococcaceae; g__Staphylococcus; s__Staphylococcus aureus
Unfiltered NCBI Taxonomy d__Bacteria; x__Terrabacteria group; p__Firmicutes; c__Bacilli; o__Bacillales; f__Staphylococcaceae; g__Staphylococcus; s__Staphylococcus aureus; x__Staphylococcus aureus VET0403R
NCBI Strain Identifiers VET0403R
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_001027105.1)
Genome Characteristics
CheckM Completeness 99.51%
CheckM Contamination 0.08%
CheckM Strain Heterogeneity 0.0
5S Count 0
16S Count 3
23S Count 3
tRNA Count 19
Contig Count 54
N50 Contigs 191,909 bp
Longest Contig 441,753 bp
Scaffold Count 48
N50 Scaffolds 235,384 bp
Longest Scaffold 644,396 bp
Genome Size 2,799,075 bp
Protein Count 2,620
Coding Density 83.79%
GC Percentage 32.82%
Ambiguous Bases N/A
GTDB representative GCA_001027105.1
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name Stap_aure_VET0403R_V1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN02404217
Country Netherlands
Date 2014-4-23
Genbank Assembly Accession GCA_000644395.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source None
Latitude Longitude None
Molecule Count N/A
CDS Count 2,862
Refseq Category na
Seq Rel Date 2014/04/23
Spanned Gaps 6
Species Taxid 1280
SSU Count 3
Submitter Broad Institute
Taxid 1422634
Total Gap Length 1281
Translation Table 11
tRNA Count (total) 56
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master JIMH00000000.1