Staphylococcus aureus
Isolate HQ 16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Firmicutes; c__Bacilli; o__Staphylococcales; f__Staphylococcaceae; g__Staphylococcus; s__Staphylococcus aureus
Filtered NCBI Taxonomy d__Bacteria; p__Firmicutes; c__Bacilli; o__Bacillales; f__Staphylococcaceae; g__Staphylococcus; s__Staphylococcus aureus
Unfiltered NCBI Taxonomy d__Bacteria; x__Terrabacteria group; p__Firmicutes; c__Bacilli; o__Bacillales; f__Staphylococcaceae; g__Staphylococcus; s__Staphylococcus aureus; x__Staphylococcus aureus USA7
NCBI Strain Identifiers USA7
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_001027105.1)
Genome Characteristics
CheckM Completeness 99.51%
CheckM Contamination 0.64%
CheckM Strain Heterogeneity 50.0
5S Count 0
16S Count 3
23S Count 3
tRNA Count 20
Contig Count 22
N50 Contigs 390,340 bp
Longest Contig 596,424 bp
Scaffold Count 21
N50 Scaffolds 390,340 bp
Longest Scaffold 596,424 bp
Genome Size 2,736,766 bp
Protein Count 2,515
Coding Density 83.87%
GC Percentage 32.87%
Ambiguous Bases N/A
GTDB representative GCA_001027105.1
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name Stap_aure_USA7_V1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN02391431
Country USA
Date 2014-4-23
Genbank Assembly Accession GCA_000640455.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source Bodily fluid
Latitude Longitude None
Molecule Count N/A
CDS Count 2,768
Refseq Category na
Seq Rel Date 2014/04/23
Spanned Gaps 1
Species Taxid 1280
SSU Count 3
Submitter Broad Institute
Taxid 1413604
Total Gap Length 100
Translation Table 11
tRNA Count (total) 59
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master JIVL00000000.1