Staphylococcus aureus
Isolate HQ 16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Firmicutes; c__Bacilli; o__Staphylococcales; f__Staphylococcaceae; g__Staphylococcus; s__Staphylococcus aureus
Filtered NCBI Taxonomy d__Bacteria; p__Firmicutes; c__Bacilli; o__Bacillales; f__Staphylococcaceae; g__Staphylococcus; s__Staphylococcus aureus
Unfiltered NCBI Taxonomy d__Bacteria; x__Terrabacteria group; p__Firmicutes; c__Bacilli; o__Bacillales; f__Staphylococcaceae; g__Staphylococcus; s__Staphylococcus aureus; x__Staphylococcus aureus GD2010-158
NCBI Strain Identifiers GD2010-158
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_001027105.1)
Genome Characteristics
CheckM Completeness 99.51%
CheckM Contamination 0.55%
CheckM Strain Heterogeneity 75.0
5S Count 0
16S Count 3
23S Count 4
tRNA Count 20
Contig Count 34
N50 Contigs 299,371 bp
Longest Contig 607,948 bp
Scaffold Count 33
N50 Scaffolds 299,371 bp
Longest Scaffold 607,948 bp
Genome Size 2,786,580 bp
Protein Count 2,579
Coding Density 83.61%
GC Percentage 32.85%
Ambiguous Bases N/A
GTDB representative GCA_001027105.1
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name Stap_aure_GD2010-158_V1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN02391361
Country Netherlands
Date 2014-4-23
Genbank Assembly Accession GCA_000639295.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source Bodily fluid
Latitude Longitude None
Molecule Count N/A
CDS Count 2,819
Refseq Category na
Seq Rel Date 2014/04/23
Spanned Gaps 1
Species Taxid 1280
SSU Count 3
Submitter Broad Institute
Taxid 1413534
Total Gap Length 377
Translation Table 11
tRNA Count (total) 58
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master JIYC00000000.1