Staphylococcus aureus
Isolate HQ 16S/23S 19 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Firmicutes; c__Bacilli; o__Staphylococcales; f__Staphylococcaceae; g__Staphylococcus; s__Staphylococcus aureus
Filtered NCBI Taxonomy d__Bacteria; p__Firmicutes; c__Bacilli; o__Bacillales; f__Staphylococcaceae; g__Staphylococcus; s__Staphylococcus aureus
Unfiltered NCBI Taxonomy d__Bacteria; x__Terrabacteria group; p__Firmicutes; c__Bacilli; o__Bacillales; f__Staphylococcaceae; g__Staphylococcus; s__Staphylococcus aureus; x__Staphylococcus aureus C2679
NCBI Strain Identifiers C2679
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_001027105.1)
Genome Characteristics
CheckM Completeness 99.51%
CheckM Contamination 0.08%
CheckM Strain Heterogeneity 0.0
5S Count 0
16S Count 4
23S Count 5
tRNA Count 19
Contig Count 30
N50 Contigs 378,064 bp
Longest Contig 586,777 bp
Scaffold Count 28
N50 Scaffolds 378,064 bp
Longest Scaffold 658,484 bp
Genome Size 2,677,855 bp
Protein Count 2,464
Coding Density 83.81%
GC Percentage 32.87%
Ambiguous Bases N/A
GTDB representative GCA_001027105.1
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name Stap_aure_C2679_V1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN02391309
Country Spain
Date 2014-4-23
Genbank Assembly Accession GCA_000638635.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source Bodily fluid
Latitude Longitude None
Molecule Count N/A
CDS Count 2,702
Refseq Category na
Seq Rel Date 2014/04/23
Spanned Gaps 2
Species Taxid 1280
SSU Count 5
Submitter Broad Institute
Taxid 1413482
Total Gap Length 355
Translation Table 11
tRNA Count (total) 56
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master JIZK00000000.1