Pseudomonas_E sp000633255
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Pseudomonadales; f__Pseudomonadaceae; g__Pseudomonas_E; s__Pseudomonas_E sp000633255
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Pseudomonadales; f__Pseudomonadaceae; g__Pseudomonas; s__
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Pseudomonadales; f__Pseudomonadaceae; g__Pseudomonas; s__Pseudomonas sp. H1h
NCBI Strain Identifiers H1h
GTDB Type Material Designation not type material
GTDB Representative of Species True (1 genome in species cluster)
Genome Characteristics
CheckM Completeness 99.93%
CheckM Contamination 0.5%
CheckM Strain Heterogeneity 25.0
5S Count 3
16S Count 1
23S Count 1
tRNA Count 20
Contig Count 78
N50 Contigs 236,242 bp
Longest Contig 621,538 bp
Scaffold Count 78
N50 Scaffolds 236,242 bp
Longest Scaffold 621,538 bp
Genome Size 6,368,146 bp
Protein Count 5,718
Coding Density 88.53%
GC Percentage 60.31%
Ambiguous Bases N/A
GTDB representative of species True
NCBI Metadata
Assembly Level Contig
Assembly Name ASM63325v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN02729852
Country Malaysia
Date 2014-04-18
Genbank Assembly Accession GCA_000633255.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source Carnivorous Plant Phytotelma
Latitude Longitude None
Molecule Count N/A
CDS Count 5,863
Refseq Category na
Seq Rel Date 2014/04/18
Spanned Gaps 0
Species Taxid 1397280
SSU Count 1
Submitter University of Malaya
Taxid 1397280
Total Gap Length 0
Translation Table 11
tRNA Count (total) 66
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master AYMJ00000000.1