Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia flexneri
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli; x__Escherichia coli O111:H8; x__Escherichia coli O111:H8 str. 2011C-3453
NCBI Strain Identifiers 2011C-3453
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_002950215.1)
Genome Characteristics
CheckM Completeness 99.93%
CheckM Contamination 0.73%
CheckM Strain Heterogeneity 50.0
5S Count 0
16S Count 1
23S Count 1
tRNA Count 18
Contig Count 295
N50 Contigs 99,462 bp
Longest Contig 308,636 bp
Scaffold Count 220
N50 Scaffolds 104,785 bp
Longest Scaffold 325,181 bp
Genome Size 5,417,659 bp
Protein Count 5,355
Coding Density 87.00%
GC Percentage 50.17%
Ambiguous Bases N/A
GTDB representative GCA_002950215.1
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name Ec2011C-3453
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN02353025
Country USA
Date 2014-4-15
Genbank Assembly Accession GCA_000632675.2
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source None
Latitude Longitude None
Molecule Count N/A
CDS Count 5,819
Refseq Category na
Seq Rel Date 2014/04/15
Spanned Gaps 75
Species Taxid 562
SSU Count 1
Submitter CDC
Taxid 1446510
Total Gap Length 11778
Translation Table 11
tRNA Count (total) 89
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master JHLU00000000.1