Pseudomonas aeruginosa
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Pseudomonadales; f__Pseudomonadaceae; g__Pseudomonas; s__Pseudomonas aeruginosa
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Pseudomonadales; f__Pseudomonadaceae; g__Pseudomonas; s__Pseudomonas aeruginosa
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Pseudomonadales; f__Pseudomonadaceae; g__Pseudomonas; x__Pseudomonas aeruginosa group; s__Pseudomonas aeruginosa; x__Pseudomonas aeruginosa BWH031
NCBI Strain Identifiers BWH031
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_001457615.1)
Genome Characteristics
CheckM Completeness 99.68%
CheckM Contamination 0.11%
CheckM Strain Heterogeneity 0.0
5S Count 3
16S Count 2
23S Count 4
tRNA Count 20
Contig Count 71
N50 Contigs 186,789 bp
Longest Contig 527,913 bp
Scaffold Count 69
N50 Scaffolds 186,789 bp
Longest Scaffold 527,913 bp
Genome Size 6,736,527 bp
Protein Count 6,246
Coding Density 89.47%
GC Percentage 66.21%
Ambiguous Bases N/A
GTDB representative GCA_001457615.1
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name Pseu_aeru_BWH031_V1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN02584697
Country USA: Brigham and Women s Hospital
Date 2014-4-14
Genbank Assembly Accession GCA_000629105.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source sputum
Latitude Longitude None
Molecule Count N/A
CDS Count 6,409
Refseq Category na
Seq Rel Date 2014/04/14
Spanned Gaps 2
Species Taxid 287
SSU Count 3
Submitter Broad Institute
Taxid 1447539
Total Gap Length 463
Translation Table 11
tRNA Count (total) 66
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master JIEC00000000.1