Escherichia coli_D
Isolate HQ 5S/16S/23S 19 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli_D
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli; x__Escherichia coli 1-250-04_S1_C3
NCBI Strain Identifiers 1-250-04_S1_C3
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_000026325.2)
Genome Characteristics
CheckM Completeness 99.97%
CheckM Contamination 0.29%
CheckM Strain Heterogeneity 66.67
5S Count 8
16S Count 5
23S Count 2
tRNA Count 19
Contig Count 169
N50 Contigs 143,966 bp
Longest Contig 505,777 bp
Scaffold Count 169
N50 Scaffolds 143,966 bp
Longest Scaffold 505,777 bp
Genome Size 5,095,530 bp
Protein Count 4,827
Coding Density 88.06%
GC Percentage 50.59%
Ambiguous Bases N/A
GTDB representative GCA_000026325.2
GTDB representative of species False
NCBI Metadata
Assembly Level Contig
Assembly Name ASM62781v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN02680163
Country Tanzania
Date 2014-04-11
Genbank Assembly Accession GCA_000627815.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source stool
Latitude Longitude None
Molecule Count N/A
CDS Count 5,261
Refseq Category na
Seq Rel Date 2014/04/11
Spanned Gaps 0
Species Taxid 562
SSU Count 6
Submitter IGS
Taxid 1444107
Total Gap Length 0
Translation Table 11
tRNA Count (total) 118
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master JJLW00000000.1