Escherichia flexneri
Isolate HQ 5S/16S/23S 19 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia flexneri
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli; x__Escherichia coli 1-392-07_S3_C3
NCBI Strain Identifiers 1-392-07_S3_C3
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_002950215.1)
Genome Characteristics
CheckM Completeness 99.97%
CheckM Contamination 1.21%
CheckM Strain Heterogeneity 50.0
5S Count 8
16S Count 7
23S Count 4
tRNA Count 19
Contig Count 222
N50 Contigs 52,454 bp
Longest Contig 143,301 bp
Scaffold Count 222
N50 Scaffolds 52,454 bp
Longest Scaffold 143,301 bp
Genome Size 4,922,974 bp
Protein Count 4,880
Coding Density 87.37%
GC Percentage 50.90%
Ambiguous Bases N/A
GTDB representative GCA_002950215.1
GTDB representative of species False
NCBI Metadata
Assembly Level Contig
Assembly Name ASM62729v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN02687478
Country Tanzania
Date 2014-4-11
Genbank Assembly Accession GCA_000627295.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source stool
Latitude Longitude None
Molecule Count N/A
CDS Count 5,305
Refseq Category na
Seq Rel Date 2014/04/11
Spanned Gaps 0
Species Taxid 562
SSU Count 7
Submitter IGS
Taxid 1444192
Total Gap Length 0
Translation Table 11
tRNA Count (total) 128
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master JJLR00000000.1