Pseudomonas_E composti
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Pseudomonadales; f__Pseudomonadaceae; g__Pseudomonas_E; s__Pseudomonas_E composti
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Pseudomonadales; f__Pseudomonadaceae; g__Pseudomonas; s__Pseudomonas composti
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Pseudomonadales; f__Pseudomonadaceae; g__Pseudomonas; s__Pseudomonas composti
NCBI Strain Identifiers AD6
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_900115475.1)
Genome Characteristics
CheckM Completeness 99.81%
CheckM Contamination 0.18%
CheckM Strain Heterogeneity 0.0
5S Count 1
16S Count 1
23S Count 2
tRNA Count 20
Contig Count 198
N50 Contigs 77,647 bp
Longest Contig 308,599 bp
Scaffold Count 198
N50 Scaffolds 77,647 bp
Longest Scaffold 308,599 bp
Genome Size 5,392,257 bp
Protein Count 4,999
Coding Density 89.71%
GC Percentage 62.51%
Ambiguous Bases N/A
GTDB representative GCA_900115475.1
GTDB representative of species False
NCBI Metadata
Assembly Level Contig
Assembly Name Pseudomonas mendocina AD6
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN02673383
Country USA: Minnesota
Date 2014-04-11
Genbank Assembly Accession GCA_000626735.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source wetland sediment
Latitude Longitude None
Molecule Count N/A
CDS Count 5,004
Refseq Category na
Seq Rel Date 2014/04/11
Spanned Gaps 0
Species Taxid 658457
SSU Count 1
Submitter University of Minnesota
Taxid 658457
Total Gap Length 0
Translation Table 11
tRNA Count (total) 70
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master JFJN00000000.1