Salmonella enterica
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Salmonella; s__Salmonella enterica
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Salmonella; s__Salmonella enterica
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Salmonella; s__Salmonella enterica; sb__Salmonella enterica subsp. enterica; x__Salmonella enterica subsp. enterica serovar Enteritidis; x__Salmonella enterica subsp. enterica serovar Enteritidis str. EC20120917
NCBI Strain Identifiers EC20120917
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_000006945.2)
Genome Characteristics
CheckM Completeness 100.0%
CheckM Contamination 0.04%
CheckM Strain Heterogeneity 0.0
5S Count 7
16S Count 7
23S Count 7
tRNA Count 20
Contig Count 4
N50 Contigs 2,626,823 bp
Longest Contig 2,626,823 bp
Scaffold Count 1
N50 Scaffolds 4,685,847 bp
Longest Scaffold 4,685,847 bp
Genome Size 4,685,847 bp
Protein Count 4,313
Coding Density 86.19%
GC Percentage 52.18%
Ambiguous Bases 241
GTDB representative GCA_000006945.2
GTDB representative of species False
NCBI Metadata
Assembly Level Chromosome
Assembly Name ASM62509v2
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN02384334
Country Canada: Ontario
Date 2016-2-10
Genbank Assembly Accession GCA_000625095.2
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source ANIMAL-chicken
Latitude Longitude None
Molecule Count 1
CDS Count 4,590
Refseq Category na
Seq Rel Date 2016/02/10
Spanned Gaps 3
Species Taxid 28901
SSU Count 7
Submitter LFZ
Taxid 1412613
Total Gap Length 39357
Translation Table 11
tRNA Count (total) 83
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master None