Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia flexneri
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli; x__Escherichia coli O26:H11; x__Escherichia coli O26:H11 str. 2010C-3472
NCBI Strain Identifiers 2010C-3472
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_002950215.1)
Genome Characteristics
CheckM Completeness 99.97%
CheckM Contamination 0.38%
CheckM Strain Heterogeneity 0.0
5S Count 0
16S Count 1
23S Count 1
tRNA Count 17
Contig Count 426
N50 Contigs 91,603 bp
Longest Contig 244,186 bp
Scaffold Count 299
N50 Scaffolds 91,954 bp
Longest Scaffold 244,652 bp
Genome Size 5,357,587 bp
Protein Count 5,322
Coding Density 86.48%
GC Percentage 50.37%
Ambiguous Bases 1
GTDB representative GCA_002950215.1
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name Ec2010C-3472
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN02352964
Country USA
Date 2014-4-9
Genbank Assembly Accession GCA_000622695.2
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source None
Latitude Longitude None
Molecule Count N/A
CDS Count 5,836
Refseq Category na
Seq Rel Date 2014/04/09
Spanned Gaps 127
Species Taxid 562
SSU Count 1
Submitter CDC
Taxid 1446719
Total Gap Length 22938
Translation Table 11
tRNA Count (total) 85
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master JHFX00000000.1