Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia flexneri
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli; x__Escherichia coli O26:H11; x__Escherichia coli O26:H11 str. 03-3500
NCBI Strain Identifiers 03-3500
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_002950215.1)
Genome Characteristics
CheckM Completeness 99.97%
CheckM Contamination 0.38%
CheckM Strain Heterogeneity 0.0
5S Count 0
16S Count 1
23S Count 1
tRNA Count 17
Contig Count 414
N50 Contigs 104,014 bp
Longest Contig 204,558 bp
Scaffold Count 273
N50 Scaffolds 117,850 bp
Longest Scaffold 230,679 bp
Genome Size 5,361,185 bp
Protein Count 5,290
Coding Density 86.34%
GC Percentage 50.33%
Ambiguous Bases 13
GTDB representative GCA_002950215.1
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name Ec03-3500
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN02352899
Country USA
Date 2014-4-9
Genbank Assembly Accession GCA_000622445.2
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source None
Latitude Longitude None
Molecule Count N/A
CDS Count 5,833
Refseq Category na
Seq Rel Date 2014/04/09
Spanned Gaps 141
Species Taxid 562
SSU Count 1
Submitter CDC
Taxid 1446710
Total Gap Length 23468
Translation Table 11
tRNA Count (total) 85
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master JHNT00000000.1