Escherichia flexneri
Isolate HQ 5S/16S/23S 19 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia flexneri
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli; x__Escherichia coli E1728
NCBI Strain Identifiers E1728;1728
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_002950215.1)
Genome Characteristics
CheckM Completeness 99.62%
CheckM Contamination 0.18%
CheckM Strain Heterogeneity 0.0
5S Count 1
16S Count 1
23S Count 1
tRNA Count 19
Contig Count 170
N50 Contigs 131,760 bp
Longest Contig 364,372 bp
Scaffold Count 170
N50 Scaffolds 131,760 bp
Longest Scaffold 364,372 bp
Genome Size 5,264,979 bp
Protein Count 5,050
Coding Density 88.16%
GC Percentage 50.26%
Ambiguous Bases N/A
GTDB representative GCA_002950215.1
GTDB representative of species False
NCBI Metadata
Assembly Level Contig
Assembly Name CLC 6.5.1 of E. coli genome
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN02678202
Country Hong Kong
Date 2014-4-8
Genbank Assembly Accession GCA_000622265.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source marine sediment
Latitude Longitude None
Molecule Count N/A
CDS Count 5,410
Refseq Category na
Seq Rel Date 2014/04/08
Spanned Gaps 0
Species Taxid 562
SSU Count 1
Submitter The Hong Kong University of Science and Technology
Taxid 1457300
Total Gap Length 0
Translation Table 11
tRNA Count (total) 79
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master JDFV00000000.1