Mycobacterium sp000620625
Isolate HQ 16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Actinobacteriota; c__Actinomycetia; o__Mycobacteriales; f__Mycobacteriaceae; g__Mycobacterium; s__Mycobacterium sp000620625
Filtered NCBI Taxonomy d__Bacteria; p__Actinobacteria; c__Actinobacteria; o__Corynebacteriales; f__Mycobacteriaceae; g__Mycobacterium; s__
Unfiltered NCBI Taxonomy d__Bacteria; x__Terrabacteria group; p__Actinobacteria; c__Actinobacteria; o__Corynebacteriales; f__Mycobacteriaceae; g__Mycobacterium; s__Mycobacterium sp. URHB0044
NCBI Strain Identifiers URHB0044
GTDB Type Material Designation not type material
GTDB Representative of Species True (1 genome in species cluster)
Genome Characteristics
CheckM Completeness 100.0%
CheckM Contamination 0.81%
CheckM Strain Heterogeneity 0.0
5S Count 0
16S Count 1
23S Count 3
tRNA Count 20
Contig Count 44
N50 Contigs 266,596 bp
Longest Contig 812,976 bp
Scaffold Count 41
N50 Scaffolds 273,670 bp
Longest Scaffold 812,976 bp
Genome Size 7,485,871 bp
Protein Count 7,261
Coding Density 92.72%
GC Percentage 66.84%
Ambiguous Bases N/A
GTDB representative of species True
NCBI Metadata
Assembly Level Scaffold
Assembly Name ASM62062v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN02743948
Country None
Date 2014-04-08
Genbank Assembly Accession GCA_000620625.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source None
Latitude Longitude None
Molecule Count N/A
CDS Count 7,221
Refseq Category na
Seq Rel Date 2014/04/08
Spanned Gaps 3
Species Taxid 1380386
SSU Count 3
Submitter DOE Joint Genome Institute
Taxid 1380386
Total Gap Length 2756
Translation Table 11
tRNA Count (total) 61
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master JIAW00000000.1