Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Burkholderiales; f__Chitinibacteraceae; g__Deefgea; s__Deefgea rivuli
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Betaproteobacteria; o__Neisseriales; f__Chromobacteriaceae; g__Deefgea; s__Deefgea rivuli
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Betaproteobacteria; o__Neisseriales; f__Chromobacteriaceae; g__Deefgea; s__Deefgea rivuli; x__Deefgea rivuli DSM 18356
NCBI Strain Identifiers DSM 18356
GTDB Type Material Designation type strain of species
GTDB Representative of Species True (1 genome in species cluster)
Genome Characteristics
CheckM Completeness 99.57%
CheckM Contamination 0.0%
CheckM Strain Heterogeneity 0.0
5S Count 7
16S Count 1
23S Count 3
tRNA Count 19
Contig Count 29
N50 Contigs 328,276 bp
Longest Contig 559,006 bp
Scaffold Count 23
N50 Scaffolds 391,390 bp
Longest Scaffold 567,200 bp
Genome Size 3,711,979 bp
Protein Count 3,385
Coding Density 87.71%
GC Percentage 49.03%
Ambiguous Bases N/A
GTDB representative of species True
NCBI Metadata
Assembly Level Scaffold
Assembly Name ASM62014v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN02952992
Country Germany
Date 2014-04-08
Genbank Assembly Accession GCA_000620145.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source None
Latitude Longitude 51.4549 N 10.05317 E
Molecule Count N/A
CDS Count 3,360
Refseq Category representative genome
Seq Rel Date 2014/04/08
Spanned Gaps 6
Species Taxid 400948
SSU Count 2
Submitter DOE Joint Genome Institute
Taxid 1121375
Total Gap Length 1365
Translation Table 11
tRNA Count (total) 58
Type Material assembly from type material
Unspanned Gaps 0
Version Status latest
WGS Master JHVM00000000.1