Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia dysenteriae
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli; x__Escherichia coli O157:H7; x__Escherichia coli O157:H7 str. K5852
NCBI Strain Identifiers K5852
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_002949675.1)
Genome Characteristics
CheckM Completeness 99.97%
CheckM Contamination 1.24%
CheckM Strain Heterogeneity 83.33
5S Count 4
16S Count 0
23S Count 0
tRNA Count 17
Contig Count 92
N50 Contigs 215,683 bp
Longest Contig 425,062 bp
Scaffold Count 92
N50 Scaffolds 215,683 bp
Longest Scaffold 425,062 bp
Genome Size 5,300,297 bp
Protein Count 5,089
Coding Density 87.87%
GC Percentage 50.28%
Ambiguous Bases 1
GTDB representative GCA_002949675.1
GTDB representative of species False
NCBI Metadata
Assembly Level Contig
Assembly Name EcK5852
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN02353119
Country USA
Date 2014-4-8
Genbank Assembly Accession GCA_000619365.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source None
Latitude Longitude None
Molecule Count N/A
CDS Count 5,559
Refseq Category na
Seq Rel Date 2014/04/08
Spanned Gaps 0
Species Taxid 562
SSU Count 1
Submitter CDC
Taxid 1446693
Total Gap Length 0
Translation Table 11
tRNA Count (total) 80
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master JHHY00000000.1