Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia dysenteriae
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli; x__Escherichia coli O157:H7; x__Escherichia coli O157:H7 str. 2009EL1913
NCBI Strain Identifiers 2009EL1913
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_002949675.1)
Genome Characteristics
CheckM Completeness 99.85%
CheckM Contamination 0.83%
CheckM Strain Heterogeneity 80.0
5S Count 2
16S Count 0
23S Count 0
tRNA Count 18
Contig Count 84
N50 Contigs 183,735 bp
Longest Contig 612,512 bp
Scaffold Count 84
N50 Scaffolds 183,735 bp
Longest Scaffold 612,512 bp
Genome Size 5,223,504 bp
Protein Count 5,021
Coding Density 87.94%
GC Percentage 50.35%
Ambiguous Bases 2
GTDB representative GCA_002949675.1
GTDB representative of species False
NCBI Metadata
Assembly Level Contig
Assembly Name Ec2009EL1913
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN02352957
Country USA
Date 2014-4-8
Genbank Assembly Accession GCA_000619165.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source None
Latitude Longitude None
Molecule Count N/A
CDS Count 5,462
Refseq Category na
Seq Rel Date 2014/04/08
Spanned Gaps 0
Species Taxid 562
SSU Count 0
Submitter CDC
Taxid 1446620
Total Gap Length 0
Translation Table 11
tRNA Count (total) 79
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master JHGD00000000.1