Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia dysenteriae
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli; x__Escherichia coli O157:H7; x__Escherichia coli O157:H7 str. 2009EL1449
NCBI Strain Identifiers 2009EL1449
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_002949675.1)
Genome Characteristics
CheckM Completeness 99.97%
CheckM Contamination 0.88%
CheckM Strain Heterogeneity 77.78
5S Count 6
16S Count 0
23S Count 0
tRNA Count 18
Contig Count 139
N50 Contigs 127,698 bp
Longest Contig 340,675 bp
Scaffold Count 139
N50 Scaffolds 127,698 bp
Longest Scaffold 340,675 bp
Genome Size 5,519,105 bp
Protein Count 5,362
Coding Density 87.69%
GC Percentage 50.22%
Ambiguous Bases 4
GTDB representative GCA_002949675.1
GTDB representative of species False
NCBI Metadata
Assembly Level Contig
Assembly Name Ec2009EL1449
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN02352955
Country USA
Date 2014-4-8
Genbank Assembly Accession GCA_000619145.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source None
Latitude Longitude None
Molecule Count N/A
CDS Count 5,859
Refseq Category na
Seq Rel Date 2014/04/08
Spanned Gaps 0
Species Taxid 562
SSU Count 3
Submitter CDC
Taxid 1446618
Total Gap Length 0
Translation Table 11
tRNA Count (total) 91
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master JHGF00000000.1