Escherichia flexneri
Isolate HQ 5S/16S/23S 18 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia flexneri
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli; x__Escherichia coli O121:H19; x__Escherichia coli O121:H19 str. K5269
NCBI Strain Identifiers K5269
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_002950215.1)
Genome Characteristics
CheckM Completeness 99.56%
CheckM Contamination 0.36%
CheckM Strain Heterogeneity 0.0
5S Count 1
16S Count 1
23S Count 1
tRNA Count 18
Contig Count 239
N50 Contigs 122,316 bp
Longest Contig 308,176 bp
Scaffold Count 187
N50 Scaffolds 135,765 bp
Longest Scaffold 424,763 bp
Genome Size 5,130,627 bp
Protein Count 4,963
Coding Density 87.39%
GC Percentage 50.43%
Ambiguous Bases N/A
GTDB representative GCA_002950215.1
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name EcK5269
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN02353108
Country USA
Date 2014-4-8
Genbank Assembly Accession GCA_000618725.2
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source None
Latitude Longitude None
Molecule Count N/A
CDS Count 5,391
Refseq Category na
Seq Rel Date 2014/04/08
Spanned Gaps 52
Species Taxid 562
SSU Count 1
Submitter CDC
Taxid 1446576
Total Gap Length 9075
Translation Table 11
tRNA Count (total) 83
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master JHIJ00000000.1